species:   Scscl
pid:       PID1591
parent:    Ssc-milR-67
paralog:   
locus:     NW_001820818.1:464789-464862
matures:   ['UCUUGAGUAUCGCUCCAGUGG', 'UUUGGGGCCGAGUAGUCUGGUUU']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820818.1:464789-464862

1 out of bounds
2 alignments
2 proper strand
1 stranded perfect matches

      **************************            ************************      
ACUCUAUAAGCUUUUGGGGCCGAGUAGUCUGGUUUUGAAGGUUUCUUGAGUAUCGCUCCAGUGGCUUGUUUCCA
.....(((((((.(((((((...(((.((.((............)).)).))).))))))).))))))).....
-------------------------------------------UCUUGAGUAUCGCUCCAGUGG---------- l=21 a=0 c
------------UUUGGGGCCGAGUAGUCUGGUUU--------------------------------------- l=23 a=0 c*
----------------------------------------------UGAGUAUCGCUCCAGUGGCUUG------ l=22 a=1 ma
--------AGCUUUUGGGGCCGAGUAGUCUGG------------------------------------------ l=24 a=0 ma*

----------------------------------------------UGAGUAUCGCUCCAGUGGCUUa------ l=22 a=1 
----------------------------------------------UGAGUAUCGCUCCAGUGGCUUG------ l=22 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-111
